I empathize with your question! There are certainly parts of the Bible that are meant as metaphor and not to be taken literally e.g. Deuteronomy 10:16 which tells us to "circumcise the foreskin of your heart". However, sections which talk about the historical experiences that shaped the Jewish people, and which many of our commandments are based upon are meant to be taken literally. Since we believe in Divine intervention, prophecy and miracles, these stories are not fantastic and unbelievable to us. However, when it is possible the commentaries do try to reduce the miraculous aspect of events and show that they can be part of nature as well.